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Overall
2005 · 2006 · 2007 · 2008 · 2009 · 2010 · 2011 · 2012
| Wk | Tm | Opp | Pass Comp | Pass Att | Comp Pct | Pass Yds | Pass TD | Pass Int | Rush | Rush Yds | Rush TD | Fum Lost |
| 1 | SFO | SEA | 15 | 20 | 75.00 | 124 | 0 | 0 | 7 | 22 | 1 | 0 |
| 2 | SFO | DAL | 16 | 24 | 66.67 | 179 | 2 | 1 | 3 | 21 | 0 | 0 |
| 3 | SFO | CIN | 20 | 30 | 66.67 | 201 | 0 | 0 | 0 | 0 | 0 | 0 |
| 4 | SFO | PHI | 21 | 33 | 63.64 | 291 | 2 | 0 | 1 | -1 | 0 | 1 |
| 5 | SFO | TBB | 11 | 19 | 57.89 | 170 | 3 | 0 | 0 | 0 | 0 | 0 |
| 6 | SFO | DET | 17 | 32 | 53.13 | 125 | 1 | 1 | 2 | 5 | 0 | 1 |
| 8 | SFO | CLE | 15 | 24 | 62.50 | 177 | 1 | 0 | 4 | 22 | 0 | 0 |
| 9 | SFO | WAS | 17 | 24 | 70.83 | 200 | 1 | 0 | 4 | 9 | 0 | 0 |
| 10 | SFO | NYG | 19 | 30 | 63.33 | 242 | 1 | 1 | 6 | 27 | 0 | 0 |
| 11 | SFO | ARI | 20 | 38 | 52.63 | 267 | 2 | 1 | 7 | 17 | 0 | 0 |
| 12 | SFO | BAL | 15 | 24 | 62.50 | 140 | 0 | 1 | 2 | 12 | 0 | 0 |
| 13 | SFO | STL | 17 | 23 | 73.91 | 274 | 2 | 0 | 2 | 10 | 0 | 0 |
| 14 | SFO | ARI | 18 | 37 | 48.65 | 175 | 0 | 0 | 1 | -3 | 0 | 0 |
| 15 | SFO | PIT | 18 | 31 | 58.06 | 187 | 1 | 0 | 3 | 12 | 0 | 0 |
| 16 | SFO | SEA | 14 | 26 | 53.85 | 179 | 0 | 0 | 5 | 22 | 0 | 0 |
| 17 | SFO | STL | 20 | 30 | 66.67 | 213 | 1 | 0 | 5 | 4 | 1 | 0 |
| Average: | 17 | 28 | 62 | 197 | 1 | 0 | 3 | 11 | 0 | 0 |
| Total: | 273 | 445 | 61.35 | 3144 | 17 | 5 | 52 | 179 | 2 | 2 |
